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Acyl-STEP-seq

Financiado

Investigating the functional roles of histone acylation co-occurrence on transcr...

Investigating the functional roles of histone acylation co-occurrence on transcription in single-cells Regulation of transcription is orchestrated by a complex combination of histone posttranslational modifications (PTMs), but how their co-occurrence in the same cell regulate gene expression is still poorly understood. Recently, no... ver más

30/06/2027

HMGU

174K€

Presupuesto del proyecto: 174K€

Líder del proyecto

HELMHOLTZ ZENTRUM MUENCHEN DEUTSCHES FORSCHUN... No se ha especificado una descripción o un objeto social para esta compañía.

TRL 4-5

Financiación concedida El organismo HORIZON EUROPE notifico la concesión del proyecto el día 2024-05-21

HORIZON-MSCA-2023-PF-01-01: MSCA Postdoctoral Fellowships 2023 ExpectedOutcome:Project results are expected to contribute to the following outcomes:

I+D

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1 Participantes

HMGU

173.85K€ | Lider

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Duración del proyecto: 37 meses Fecha Inicio: 2024-05-21
Fecha Fin: 2027-06-30

Líder del proyecto

HELMHOLTZ ZENTRUM MUENCHEN DEUTSCHES FORSCHUN... No se ha especificado una descripción o un objeto social para esta compañía.

TRL 4-5

Presupuesto del proyecto 174K€

Descripción del proyecto Regulation of transcription is orchestrated by a complex combination of histone posttranslational modifications (PTMs), but how their co-occurrence in the same cell regulate gene expression is still poorly understood. Recently, novel histone acylations have been identified, namely propionylation (pr) and butyrylation (bu). They co-exist with acetylation (ac), arise from cellular metabolism, and are key candidates to fine-tune chromatin activity and transcription. This project will answer fundamental questions on the role of acylations in gene regulation and their co-occurrence in single cells, and provide novel insights into metabolic disorders (propionic acidemia; PA), where histone acylations are altered. Through this project, I will generate the first genome-wide histone acylation map in single cells, functionally link their co-occurrence with gene expression, and establish the impact of a metabolic disease on histone acylations and transcription. Our preliminary data showed that histone H4K16ac/pr/bu play key roles in chromatin activity and could thus regulate transcription, and are impaired in livers of a PA mouse model. I hypothesize that acylations co-occurrence will regulate transcription, and altered propionyl-CoA metabolism in PA will impact H4K16 acylations, and consequently transcription. To achieve this, I will develop an experimental and computational framework for single-cell Simultaneous Transcriptome and Epigenome Profiling (sc-STEP-seq). With this approach, I will map H4K16ac/pr/bu and the transcriptome in single-cells, and integrate epigenomic and transcriptomic changes, in liver samples from PA mice. This interdisciplinary project will address a fundamental question in epigenetics: the functional relevance of histone PTMs regulated by metabolic state in single cells, advance the technology for single-cell multimodal epigenomic profiling, and provide for the first-time molecular understanding of histone acylations in a clinically relevant model.

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