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GeCo

Financiado

Cerrado

Data Driven Genomic Computing

Next-generation sequencing technology has dramatically reduced the cost and time of reading the DNA. Huge investments are targeted to sequencing the DNA of large populations, and repositories of well-curated sequence data are bein... ver más

31/08/2021

POLIMI

3M€

Presupuesto del proyecto: 3M€

Líder del proyecto

POLITECNICO DI MILANO No se ha especificado una descripción o un objeto social para esta compañía.

TRL 4-5

Fecha límite participación Sin fecha límite de participación.

Ver 2 Participantes

Financiación concedida El organismo H2020 notifico la concesión del proyecto el día 2021-08-31

ERC-ADG-2015: ERC Advanced Grant

I+D

Cerrada hace 9 años

0% 100% 100%

Información adicional privada

No hay información privada compartida para este proyecto. Habla con el coordinador.

2 Participantes

POLIMI

2.50M€ | Lider

GRUPO ANTOLIN INGENIERIA

328.19K€ | Participante

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Duración del proyecto: 61 meses Fecha Inicio: 2016-07-18
Fecha Fin: 2021-08-31

Líder del proyecto

POLITECNICO DI MILANO No se ha especificado una descripción o un objeto social para esta compañía.

TRL 4-5

Presupuesto del proyecto 3M€

Fecha límite de participación Sin fecha límite de participación.

Descripción del proyecto Next-generation sequencing technology has dramatically reduced the cost and time of reading the DNA. Huge investments are targeted to sequencing the DNA of large populations, and repositories of well-curated sequence data are being collected. Answers to fundamental biomedical problems are hidden in these data, e.g. how cancer arises, how driving mutations occur, how much cancer is dependent on environment. But genomic computing has not comparatively evolved. Bioinformatics has been driven by specific needs and distracted from a foundational approach; hundreds of methods solve individual problems, but miss the broad perspective. The objective of GeCo is to rethink genomic computing through the lens of basic data management. We will first design the data model, using few general abstractions that guarantee interoperability between existing data formats. Next, we will design a new-generation query language inspired by classic relational algebra and extended with orthogonal, domain-specific abstractions for genomics. Query processing will trace metadata and computation steps, opening doors to the seamless integration of descriptive statistics and high-level data analysis (e.g., DNA region clustering and extraction of regulatory networks). Genomic computing is a big data problem, therefore we will also achieve computational efficiency by using parallel computing on both clusters and public clouds; the choice of a suitable data model and of computational abstractions will boost performance in a principled way. The resulting technology will be applicable to individual and federated repositories, and will be exploited for providing integrated access to curated data, made available by large consortia, through user-friendly search services. Our most far-fetching vision is to move towards an Internet of Genomes exploiting data indexing and crawling. The PI’s background in distributed data, data modelling, query processing and search will drive a radical paradigm shift.

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